Post-Transcriptional Modification Model

A Combined Expression-Interaction Model for
Inferring the Temporal Activity of Transcription
Factors

This webpage provides supporting information for:

Yanxin Shi, Itamar Simon, Tom Mitchell, Ziv Bar-Joseph
A Combined Expression-Interaction Model for Inferring the Temporal Activity of Transcription Factors

Dataset list

Activity v.s. expression plots for all TFs

Table for comparison with ChIp-chip binding

New ChIP-chip experiments for GCN4 in heat shock

MATLAB implementation

Two examples of post-transcriptionally modified TFs. (a) The observed mRNA expression levels (blue) v.s. TF activity levels (red) inferred by PTMM for all 17 experimental conditions (separated by dashed lines) for (a) Msn4 and (b) Rap1.

Last updated on 06/27/2008.