Lists of genes (using blattner numbers) used in the validation sets for the results of Figure 3 of the paper. Genes appearing in these list satisfy the following criteria:

  • Are among the set of 4205 genes for which predictions were made.
  • Does not have direct evidence of being regulated by the TF curated into EcoCyc 11.5.
  • Appears in a list of ChIP-chip targets in the cited paper or shares a transcriptional unit assignment in RegulonDB 5.7 with such a gene.

  • CRP (Grainger et al., Proc Natl Acad Sci 2005; PubMed: 1308901)
    Fis (Grainger et al., Nucleic Acids Res 2006; PubMed: 16963779)
    FNR (Grainger et al., Nucleic Acids Res 2007; PubMed: 1802558)
    H-NS (Oshima et al., DNA Res 2006; PubMed: 17046956)
    IHF (Grainger et al., Nucleic Acids Res 2006; PubMed: 16963779)