GenGO -- GENerative GO analysis
Step 1:
Select the species.
Budding Yeast
Human
Mouse
Step 2:
Select the input type
NCBI Entrez ID (LocusLink)
Symbol
Step 3:
Input gene list (each gene on a seperate line):
Step 4:
Select algorithm.
Option 1: Manually set parameters: p =
0.10
0.15
0.20
0.25
0.30
0.35
0.40
0.45
0.50
0.55
0.60
0.65
0.70
0.75
0.80
0.85
0.90
0.95
, q =
0.10
0.15
0.20
0.25
0.30
0.35
0.40
0.45
0.50
0.55
0.60
0.65
0.70
0.75
0.80
0.85
0.90
0.95
Option 2: Optimize p
Option 3: Optimize p and q
Step 5:
(It may take a while to finish if you choose to optimize one or both parameters.)
Reference
[1]
Y. Lu
, R. Rosenfeld, I. Simon, G.J. Nau and Z. Bar-Joseph,
A Probabilistic Generative Model for GO Enrichment Analysis,
Nucleic Acids Research 2008, doi:10.1093/nar/gkn434.