Stamp Results

Jump to: Multiple Alignment Motif Tree Motif Matching
Input file: 10 motifs loaded
Settings: Metric=PCC, Alignment=SWU, Gap-open=1000, Gap-extend=1000, -nooverlapalign
Multiple Alignment=IR, Tree=UPGMA, Matching against: TRANSFAC
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Multiple Alignment
(Consensus sequence representations shown, but multiple alignment was carried out on the matrices)
DME21: --AYATTTTT---
DME73: TTAWCTTT-----
DME40: WAWTATTT-----
DME18: -AWTATTTT----
DME76: ----TTYTGRAA-
DME54: ----CTCTGKGT-
DME39: -----TKTCTCCT
DME64: -----TTTTTWAT
DME48: -----TTTTCTGA
DME15: -AGGCTTTA----

Familial Profile:
(click for matrix)

Motif Tree

Tree (drawn by Phylip)
Click here for Newick-format tree (viewable with MEGA)		Input MotifBest match in TRANSFAC

DME21
DMRT7_M01151
(E val: 1.1748e-06)

DME40
HNF3beta_M00131
(E val: 2.2341e-08)

DME18
FOXJ2_M00423
(E val: 4.1244e-08)

DME73
Evi-1_M00011
(E val: 3.0158e-07)

DME76
C-EBPgamma_M00622
(E val: 1.6701e-07)

DME64
unc-86_M00689
(E val: 2.1721e-09)

DME39
ARF_M00438
(E val: 4.0015e-06)

DME48
Abd-B_M01094
(E val: 8.9416e-06)

DME15
Retroviral_M00212
(E val: 5.2780e-05)

DME54
CP2_M00072
(E val: 3.1033e-04)

Motif Similarity Matches

DME21
forward

reverse compliment

 NameE value
Alignment
Motif
DMRT7_M011511.1748e-06
----AYATTTTT-
TGTNACANTKTNG
MCM1+SFF_M010511.3481e-06
------------AAAAATRT------
TNCCNAAWNNGGNAAWANNTAAAYAA
FOXJ2_M004235.1946e-06
AAAAATRT-----
NMAAATATTATKR
BR-C_M000925.3628e-06
-AAAAATRT------
RANAAATAGNWNNNN
MEF-2_M000069.0557e-06
----AYATTTTT---
RGRGTTATTTTTAGA


DME40
forward

reverse compliment

 NameE value
Alignment
Motif
HNF3beta_M001312.2341e-08
-WAWTATTT-----
GNANTRTTTRYTTW
FOXJ2_M004234.3076e-07
---WAWTATTT--
YMATAATATTTKN
ATHB-5_M005036.0827e-07
WAWTATTT
AATNATTG
XFD-1_M002671.7997e-06
-WAWTATTT----
RYWWTATTTACWT
POU1F1_M007446.3121e-06
WAWTATTT-
WWTTATNCA


DME18
forward

reverse compliment

 NameE value
Alignment
Motif
FOXJ2_M004234.1244e-08
-AAAATAWT----
NMAAATATTATKR
XFD-1_M002671.4141e-06
--AWTATTTT---
RYWWTATTTACWT
MEF-2_M004062.7500e-06
----AAAATAWT---
KCTAAAAATAACCCN
MEF-2_M000062.9784e-06
---AWTATTTT----
RGRGTTATTTTTAGA
Croc_M002665.2109e-06
-------AWTATTTT
NNNNMTATTTATTNT


DME73
forward

reverse compliment

 NameE value
Alignment
Motif
Evi-1_M000113.0158e-07
TTAWCTTT
TTATCTTG
Evi-1_M000803.4111e-06
TTAWCTTT--
TTATCTTATC
Evi-1_M000795.2915e-06
TTAWCTTT--
TTATCTTRTC
IRF_M009725.7982e-06
AAAGWTAA--
AAANWGAAAN
ISGF-3_M002581.9424e-05
---AAAGWTAA---
GNGAAANWGAAACT


DME76
forward

reverse compliment

 NameE value
Alignment
Motif
C-EBPgamma_M006221.6701e-07
-TTYTGRAA---
WTTYTGAAATNA
HSF1_M010233.4618e-06
TTYTGRAA--------
TTCTRGAANNTTCTYM
MADS-A_M004087.9589e-06
-------TTYTGRAA
TTTCCATTTTTNNWN
STAT5B_M004591.5093e-05
---TTYCARAA---
NRNTTCCNGGAAWN
HSF_M001691.7698e-05
-TTYTGRAA-----
NTTCNNGAANNTTC


DME64
forward

reverse compliment

 NameE value
Alignment
Motif
unc-86_M006892.1721e-09
-TTTTTWAT
ATTTYKWAT
Hb_M000222.2334e-06
TTTTTWAT-
NTTTTTNYK
Nkx6-1_M004242.8170e-06
-----ATWAAAAA
AANCAATTAAAW-
FOXP1_M009874.7303e-06
ATWAAAAA-----------
ATAAAAAACAACACAAATA
Abd-B_M010948.4480e-06
TTTTTWAT
--TTTTAT


DME39
forward

reverse compliment

 NameE value
Alignment
Motif
ARF_M004384.0015e-06
AGGAGAMA-
--GAGACAA
IRF_M009721.9566e-04
-TKTCTCCT-
NTTTCWNTTT
ISGF-3_M002583.6247e-04
--TKTCTCCT----
AGTTTCWNTTTCNC
HSF_M001631.1939e-03
-AGGAGAMA-----
GAANAGAANAGAAN
HSF_M001641.1939e-03
-AGGAGAMA-----
GAANAGAANNTTCT


DME48
forward

reverse compliment

 NameE value
Alignment
Motif
Abd-B_M010948.9416e-06
TTTTCTGA
TTTTAT--
MEIS1A-HOXA9_M004201.9385e-05
TCAGAAAA-----
TCRTAAAMCTGTC
MEIS1B-HOXA9_M004217.6360e-05
-----TTTTCTGA
GACASNTTWAYRR
Cdx-2_M007292.5920e-04
--TCAGAAAA---
NGYNATAAAANTN
Hb_M000222.7174e-04
TCAGAAAA--
-MRNAAAAAN


DME15
forward

reverse compliment

 NameE value
Alignment
Motif
Retroviral_M002125.2780e-05
-------AGGCTTTA--
NAGNRRRRRGNTTTATT
c-Rel_M000535.5959e-04
-TAAAGCCT
GGAAWNYCC
Lentiviral_M003185.6138e-04
AGGCTTTA--
---CTTTATT
PLZF_M010751.2096e-03
---------AGGCTTTA-----------
GANCWRNTMAARNTTTANCNNCNRWNNA
LEF1_M008053.5118e-03
AGGCTTTA
---CTTTG


DME54
forward

reverse compliment

 NameE value
Alignment
Motif
CP2_M000723.1033e-04
CTCTGKGT----
--CTGGKTNGNG
CACCC-binding_M007215.3682e-04
----ACMCAGAG---
CCNCACCCWNNKGNT
RAP1_M002139.8829e-04
---CTCTGKGT--
NRTGTATGGGTKY
Grainyhead-Elf-1-NTF-1_M009512.0072e-03
-ACMCAGAG
AAACCRG--
Cdx_M009912.2904e-03
-------CTCTGKGT--
TTTATNNNTYTNNYNRT


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STAMP is written by Shaun Mahony