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Jump to: Multiple Alignment Motif Tree Motif Matching
Input file: 10 motifs loaded
Settings: Metric=PCC, Alignment=SWU, Gap-open=1000, Gap-extend=1000, -nooverlapalign
Multiple Alignment=IR, Tree=UPGMA, Matching against: TRANSFAC
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Multiple Alignment
(Consensus sequence representations shown, but multiple alignment was carried out on the matrices)
| Motif1: | ---WCAGGAAW- |
| Motif2: | --CWCAGAAG-- |
| Motif3: | ----AAGSAAAT |
| Motif4: | --TRGAGRAY-- |
| Motif5: | RAGTGAGR---- |
| Motif6: | ----AATNATTW |
| Motif7: | -RRGCAGG---- |
| Motif8: | --AGATGAAG-- |
| Motif9: | -TNTCASAG--- |
| Motif10: | --TGTAYAAT-- |
| Familial Profile: (click for matrix) |  |
Motif Tree
| Tree (drawn by Phylip) Click here for Newick-format tree (viewable with MEGA) | Input Motif | Best match in TRANSFAC |
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Motif Similarity Matches
| Motif1 |  |  |
| Name | E value | |||
| STAT5B_M00459 | 1.0766e-06 | NRNTTCCNGGAAWN |  | |
| MCM1_M00125 | 2.8807e-06 | TTACCNNWTTRGGNN |  | |
| Tel-2_M00678 | 6.8635e-06 | -CAGGAAGTA |  | |
| c-Ets-2_M00340 | 2.7179e-05 | ANNNACTTCCTGY |  | |
| AREB6_M00412 | 5.4866e-05 | NYNYACCTGWNY |  |
| Motif3 |  |  |
| Name | E value | |||
| Oct-1_M00342 | 1.6512e-07 | NATTTGCAT |  | |
| Helios_M01004 | 1.3947e-06 | NTTTTCCTWN |  | |
| Octamer_M00795 | 1.7079e-06 | NATGCAAATN |  | |
| Oct-1_M00930 | 1.9879e-06 | NATGNAAATN |  | |
| Oct-1_M00161 | 3.9055e-06 | KNATTTGCATAYY |  |
| Motif7 |  |  |
| Name | E value | |||
| E2A_M00973 | 7.5456e-07 | -RNCAGNT |  | |
| E47_M00002 | 5.2930e-06 | NNNNACACCTGCNS |  | |
| E2A_M00804 | 1.4406e-05 | NMNGNGNCAGGTG |  | |
| KAISO_M01119 | 3.7810e-05 | NTNGCAGGA |  | |
| MyoD_M00184 | 5.0769e-05 | -GNCAGNTGN |  |
| Motif2 |  |  |
| Name | E value | |||
| LMAF_M01139 | 4.5026e-05 | STCAGCAG |  | |
| Alx-4_M00619 | 2.1155e-04 | GATTATTCTCAG |  | |
| PEND_M01015 | 3.0011e-04 | ACTTCTT-- |  | |
| STAT_M00777 | 1.1354e-03 | TCCNAGAANNNN |  | |
| Nrf-2_M00821 | 1.7507e-03 | NNTGACTCAGCA- |  |
| Motif9 |  |  |
| Name | E value | |||
| Zta_M00711 | 3.3013e-05 | TGWGYCANNNTN |  | |
| TGIF_M00418 | 6.5814e-05 | WNNTGACAGC |  | |
| ER_M00191 | 1.9395e-04 | NNNGGTCANNNNNNNYNN |  | |
| CREB_M00801 | 3.1063e-04 | --NTGAC- |  | |
| Brachyury_M00150 | 1.4416e-03 | AATTTCACACCTAGGTGTSANNN |  |
| Motif5 |  |  |
| Name | E value | |||
| IRF-1_M00747 | 2.7547e-07 | AANTGA-- |  | |
| IRF_M00972 | 5.9545e-06 | NTTTCWNTTT |  | |
| ISGF-3_M00258 | 3.3481e-05 | AGTTTCWNTTTCNC |  | |
| IRF-2_M00063 | 4.8245e-05 | AAAAGYGAAASY |  | |
| ICSBP_M00699 | 6.3726e-05 | AARTGAAACTG |  |
| Motif4 |  |  |
| Name | E value | |||
| Alx-4_M00619 | 6.3044e-04 | GATTATTCTCAG | | |
| dl_M00120 | 1.4842e-03 | NGNTTTTCYC |  | |
| NF-kappaB_M00208 | 1.5484e-03 | GGGAYTTTCCN |  | |
| Olf-1_M00261 | 2.3441e-03 | NCMNNYTCCCNRGGGANTNGN |  | |
| Lyf-1_M00141 | 2.4240e-03 | --YCTCCCAA |  |
| Motif10 |  |  |
| Name | E value | |||
| Pit-1_M00802 | 7.3759e-06 | NNNNNATAWNNATGAAK |  | |
| GR_M00205 | 7.0118e-05 | MAGRACANNNTGTAC- |  | |
| POU1F1_M00744 | 1.7746e-04 | WWTTATNCA |  | |
| SOX17_M01016 | 1.8707e-04 | ---ACAAT |  | |
| TBP_M00980 | 3.7643e-04 | -NNATAA- |  |
| Motif6 |  |  |
| Name | E value | |||
| HAHB-4_M00820 | 6.9882e-09 | NAATYATT |  | |
| ATHB-5_M00503 | 3.8629e-08 | CAATNATT- |  | |
| HNF1_M00790 | 1.6840e-06 | NNNRNNAANNATTAACN |  | |
| ATHB-9_M00417 | 2.2457e-06 | GNRNGTAATCATTACNNN |  | |
| Athb-1_M00089 | 3.3484e-06 | TNCAATAATTNNN |  |
| Motif8 |  |  |
| Name | E value | |||
| PU.1_M00658 | 2.3587e-05 | CTTCCTC- |  | |
| Elf-1_M00746 | 8.6777e-05 | AYTTCCTCTTN |  | |
| dTCF_M00362 | 1.6864e-04 | CTTTGATCTT |  | |
| HTF_M00538 | 4.0320e-04 | NNNWNNRNTGACGTGKNNNWNNN |  | |
| PEND_M01015 | 5.8065e-04 | ACTTCTT-- | |